Difference between revisions of "Team:Paris Bettencourt/Notebook/VitaminB12"
| Line 14: | Line 14: | ||
<div id="notebookContent"> | <div id="notebookContent"> | ||
| − | <a name="july" class="anchor"><h1>July</h1></a> | + | <a name="july one" class="anchor"><h1>July</h1></a> |
<h2 class="date">July 28th</h2> | <h2 class="date">July 28th</h2> | ||
<ul> | <ul> | ||
| Line 44: | Line 44: | ||
</li> | </li> | ||
<li>Successfully grew <i>P. freudenreichii</i> in MEA at 30°C, in aerobic conditions.</li> | <li>Successfully grew <i>P. freudenreichii</i> in MEA at 30°C, in aerobic conditions.</li> | ||
| + | <li>Made a glycerol stock of it: g15.53.</li> | ||
</ul> | </ul> | ||
| − | <h2 class="date">July 30th</h2> | + | |
| + | |||
| + | <h2 class="date one">July 30th</h2> | ||
<img style="float:right" src="https://static.igem.org/mediawiki/2015/f/f7/PB_B12_Result_plates.png" width="400px"> | <img style="float:right" src="https://static.igem.org/mediawiki/2015/f/f7/PB_B12_Result_plates.png" width="400px"> | ||
<ul> | <ul> | ||
| Line 57: | Line 60: | ||
<li><i>Saccharomyces cerevisiae</i></li> | <li><i>Saccharomyces cerevisiae</i></li> | ||
</ul></li> | </ul></li> | ||
| − | <li>Result (after 24 hours) | + | <li>Result (after 24 hours) are on the right</li> |
| + | </ul> | ||
| + | |||
| + | |||
| + | |||
| + | |||
| + | |||
| + | |||
| + | |||
| + | |||
| + | <a name="august" class="anchor"><h1></h1></a> | ||
| + | |||
| + | |||
| + | <h2 class="date two">August 3rd</h2> | ||
| + | <ul> | ||
| + | <li>Plated from the original <i>P. freudenreichii</i> glycerol stock on MEA. Did not grow.</li> | ||
| + | <li>For now, propioni grows only in MEA liquid (does not grow on MEA+agar nor YEL+agar</li> | ||
</ul> | </ul> | ||
| + | |||
| + | |||
| + | . | ||
| + | <h2 class="date two">August 15th</h2> | ||
| + | <ul> | ||
| + | <li>Successfully grew <i>P. freudenreichii</i> in MEA liquid and YEL liquid</li> | ||
| + | <li>It seemed to grow much faster. Do I have a contanimation? Need to check.</li> | ||
| + | </ul> | ||
| + | |||
| + | <h2 class="date three">August 16th</h2> | ||
| + | <ul> | ||
| + | <li>Made a gram coloration to assess whether the strain I have is gram positive, as <i>P. freudenreichii</i>.</li> | ||
| + | <li>They seemed purple (as Gram positive bacteria).</li> | ||
| + | <li>Need further checking.</li> | ||
| + | </ul> | ||
| + | |||
| + | <h2 class="date three">August 17th</h2> | ||
| + | <ul> | ||
| + | <li>Tried to extract the genomic DNA to sequence the 16s rRNA.</li> | ||
| + | <li>Problem: followed only the short sheet in the Qiagen DNeasy Blood & Tissue extraction kit, which was not made for gram-positive bacteria.</li> | ||
| + | <li>Tried with adding lysozyme to degrade the cell wall, but still no DNA out of the extraction.</li> | ||
| + | </ul> | ||
| + | |||
| + | |||
| + | <h2 class="date three">August 17th</h2> | ||
<hr> | <hr> | ||
Revision as of 21:31, 9 September 2015
Ferment It Yourself
iGEM Paris-Bettencourt 2O15
- Background
- Design
-
-
-
-
-
-
-
Vitamin A Vitamin B2 Vitamin B12 Phytase Riboswitch Differentiation on E. coli Differentiation on S. cerevisiae Manufacturing Idli and Micro-organisms July
July 28th
- Received Propionibacterium freudenreichii subsp. shermanii CIRM BIA1 from the INRA Rennes CIRM collection.
- Made the following media:
- MEA (waking lyophilized bacteria up), 1 L
Product Quantity BHI broth 37 g Soja peptone 5 g Yeast extract 5 g Glucose 3 g Water Fill to 1 L - YEL (propionibacteria growth medium), 1 L
Product Quantity Sodium lactate (60% syrup) 21.4 g Tryptone 10 g Yeast extract 10 g K2HPO4, 3 H2O 328 mg MnSO4, H2O 56 mg Water Fill to 1 L
- MEA (waking lyophilized bacteria up), 1 L
- Successfully grew P. freudenreichii in MEA at 30°C, in aerobic conditions.
- Made a glycerol stock of it: g15.53.
July 30th
- Tested the YEL+agar medium with the following strains:
- P. freudenreichii
- Lactobacillus lactis
- E. coli
- Lactobacillus plantarum
- Saccharomyces cerevisiae
- Result (after 24 hours) are on the right
August 3rd
- Plated from the original P. freudenreichii glycerol stock on MEA. Did not grow.
- For now, propioni grows only in MEA liquid (does not grow on MEA+agar nor YEL+agar
August 15th
- Successfully grew P. freudenreichii in MEA liquid and YEL liquid
- It seemed to grow much faster. Do I have a contanimation? Need to check.
August 16th
- Made a gram coloration to assess whether the strain I have is gram positive, as P. freudenreichii.
- They seemed purple (as Gram positive bacteria).
- Need further checking.
August 17th
- Tried to extract the genomic DNA to sequence the 16s rRNA.
- Problem: followed only the short sheet in the Qiagen DNeasy Blood & Tissue extraction kit, which was not made for gram-positive bacteria.
- Tried with adding lysozyme to degrade the cell wall, but still no DNA out of the extraction.
August 17th
References
Biedendieck, R., Malten, M., Barg, H., Bunk, B., Martens, J. H., Deery, E., ... & Jahn, D. (2010). Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium. Microbial biotechnology, 3(1), 24-37.
B12 measurement: http://iioab.org/Vol2%282%292011/Karmi%20et%20al-IIOABJ-2%20%282%29-2011-23-32p.pdf
