Difference between revisions of "Team:Paris Bettencourt/Bibliography"

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<li>"A general method for numerically simulating the stochastic time evolution of coupled chemical reactions", Gillespie, Journal of Computational Physics (1976).</li>
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<li>"Exact Stochastic Simulation Of Coupled Chemical-Reactions", Gillespie, Journal of Physical Chemistry (1977).</li>
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<li>"A rigorous derivation of the chemical master equation", Gillespie, Physica A: Statistical Mechanics and its Applications (1992).</li>
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<li>"The slow-scale stochastic simulation algorithm", Gillespie, The Journal of Chemical Physics (2005).</li>
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<li>"Perspective: Stochastic algorithms for chemical kinetics", Gillespie, The Journal of Chemical Physics, (2013).</li>
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Revision as of 16:16, 15 October 2015

Bibliography

Vitamin A project

  • Li, Q., Sun, Z., Li, J. & Zhang, Y. Enhancing beta-carotene production in Saccharomyces cerevisiae by metabolic engineering. FEMS Microbiology Letters 345, 94-101 (2013).
  • Beekwilder, J. et al. Polycistronic expression of a ß-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to ß-ionone production. Journal of Biotechnology (2014).
  • Voth, W.P., Richards, J.D., Shaw, J.M. & Stillman, D.J. Yeast vectors for integration at the HO locus. Nucleic acids research 29, E59-E59 (2001).

Riboflavin project:

  • Indian Council of Medical Research 2009 report
  • 'Micronutrient deficiency and cognitive and physical performance in Indian children', S Swaminathan, European J. Clin. Nut., 2013
  • 'Less Recognised Micronutrient Deficiencies In India', Mahtab S. Bamji, Bulletin of Nutrition Foundation of India, 1993
  • 'Three biotechnical processes using Ash bya gossypii, Candida albicans or Bacillus subtilis compete with chemical riboflavin production', K.-P Stahmann & al, Appl Micr. Biotech., 2000
  • 'Diversity and functional characterization of microflora isolated from traditional fermented food idli', Chinnashanmugam Saravanan, J Food Sci Technol, 2015
  • 'Applied Microbiology', Sanjai Saxena
  • 'Genetic engineering of Bacillus subtilis for the commercial production of riboflavin', John B Perkins, J. Ind. Microbiol. Biotechnol. 22, 8-18, 1999
  • 'Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation', A. G. Vitreschak, Nuc. Acid Res., 2002
  • 'Tuning constitutive recombinant gene expression in Lactobacillus plantarum', Tauer et al., Microbial Cell Factories 2014
  • 'Kinetic modeling of riboflavin biosynthesis in Bacillus subtilis under production conditions', M. Birkenmeier, Biotech. Lett., 2014
  • 'A synthetic promoter library for constitutive gene expression in Lactobacillus plantarum',I. Rud, Microbiology, 2006
  • 'Direct cloning in Lactobacillus plantarum: Electroporation with non-methylated plasmid DNA enhances transformation efficiency and makes shuttle vectors obsolete', Katharina SpathSpath et al. Microbial Cell Factories 2012, 11:141
  • 'Repetitive, Marker-Free, Site-Specific Integration as a Novel Tool for Multiple Chromosomal Integration of DNA',Kia Vest Petersen
  • 'Bacterial vitamin B2, B11 and B12 overproduction: An overview', Catherine M. Burgess

Cobalamin project:

  • "Vitamins in the prevention of human diseases", Wolfgang Herrmann
  • "Vitamin B12 deficiency", Alesia Hunt, BMJ, 2014
  • "The total synthesis of vitamin B12" R. B. WOODWARD
  • http://www.synarchive.com/syn/71

Cobalamin project:

  • "Dietary factors that affect biological availability of trace elements", O'Dell 1972, Ann N Y Acad Sci.
  • "Reduction of phytic acid and enhancement of bioavailable micronutrients in food grains". Gupta RK. J Food Sci Technol. 2015

Continuity

  • "Short motif sequences determine the targets of the prokaryotic CRISPR defence system", Mojica et al., 2009, Microbiology
  • "RNA-guided editing of bacterial genomes using CRISPR-Cas systems", Jiang, Bikard et al., 2013, Nat Biotechnol
  • "Cre recombinase: the universal reagent for genome tailoring", Nagy et al., 2000, Genesis 26 (2)
  • "A high-throughput screen identifying sequence and promiscuity characteristics of the loxP spacer region in Cre-mediated recombination", Missirlis et al., 2006, BMC Genomics
  • "One-step cloning and chromosomal integration of DNA", Saint-Pierre et al., 2013, ACS synthetic biology
  • "Dynamics of chromosome segregation in Escherichia coli", Nielsen et al., 2006, BioCentrum, Ph.D thesis.
  • "Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system", Bikard et al., 2013, Nucleic Acids Res
  • "RNA-guided gene activation by CRISPR-Cas9–based transcription factors", Perez-Pinera et al., 2013, Nature Methods

Bibliography

  • "A general method for numerically simulating the stochastic time evolution of coupled chemical reactions", Gillespie, Journal of Computational Physics (1976).
  • "Exact Stochastic Simulation Of Coupled Chemical-Reactions", Gillespie, Journal of Physical Chemistry (1977).
  • "A rigorous derivation of the chemical master equation", Gillespie, Physica A: Statistical Mechanics and its Applications (1992).
  • "The slow-scale stochastic simulation algorithm", Gillespie, The Journal of Chemical Physics (2005).
  • "Perspective: Stochastic algorithms for chemical kinetics", Gillespie, The Journal of Chemical Physics, (2013).