Difference between revisions of "Team:UCSF/Collaborations"

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<h2> Collaborations</h2>
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<p>
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Sharing and collaboration are core values of iGEM. We encourage you to reach out and work with other teams on difficult problems that you can more easily solve together.
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<div class="highlightBox">
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<h4> Which other teams can we work with? </h4>
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<div class="main-container">
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<p>
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You can work with any other team in the competition, including software, hardware, high school and other tracks. You can also work with non-iGEM research groups, but they do not count towards the <a hreef="https://2015.igem.org/Judging/Awards#Medals">iGEM team collaboration gold medal criterion</a>.
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</p>
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<p>
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<div class="divider"></div>
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In order to meet the gold medal criteria on helping another team, you must complete this page and detail the nature of your collaboration with another iGEM team.
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</p>
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</div>
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<p>
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  <div class="main-content">
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Here are some suggestions for projects you could work on with other teams:
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</p>
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<ul>
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    <p class="headerTeam">COLLABORATIONS</p>
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<li> Improve the function of another team's BioBrick Part or Device</li>
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<li> Characterize another team's part </li>
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<li> Debug a construct </li>
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<li> Model or simulating another team's system </li>
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<li> Test another team's software</li>
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<li> Help build and test another team's hardware project</li>
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<li> Mentor a high-school team</li>
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</ul>
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    <div class="headerBreak"></div>
  
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    <p class="content2">
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In addition to working on our project, our team also assisted and collaborated with various other iGEM Teams. These interactions allowed us to form stronger connections in the iGEM community and ultimately benefited the projects of all parties involved.
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    </p>
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    <div class="headerBreak"></div>
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    </br>
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    </br>
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    <p class="headerTeamSub">ELEANOR AMIDEI</p>
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 +
    <div class="headerBreakSub"></div>
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    </br>
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    <p class="content1">
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 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/4/4d/UCSF_Eleanor.png/800px-UCSF_Eleanor.png" alt="Eleanor Amidei" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed initial circuit.
 +
        </li>
 +
 +
        <li>Constructed clustering circuit.
 +
        </li>
 +
 +
        <li>Constructed terminator sequences.
 +
        </li>
 +
 +
        <li>Assisted other team members with lab work.
 +
        </li>
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 +
        <li>Policy and Practices Co­-Captain.
 +
        </li>
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 +
        <li>Gathered data on clustering.
 +
        </li>
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        </br>
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 +
      </ul>
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 +
    </p>
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 +
    </br>
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 +
    <p class="headerTeamSub">ERIKA CAGAMPAN</p>
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 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
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 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/8/88/UCSF_Erika.png/800px-UCSF_Erika.png" alt="Erika Cagampan" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed terminator sequences.
 +
        </li>
 +
 +
        <li>Constructed signal degradation circuits.
 +
        </li>
 +
 +
        <li>Social Media Correspondent.
 +
        </li>
 +
 +
        <li>Captain of Wiki Flicks.
 +
        </li>
 +
 +
        <li>Policy and practices Co-­Captain.
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        </li>
 +
 +
        <li>Constructed mathematical modeling simulations.
 +
        </li>
 +
 +
        <li>Constructed and organized team member biographies.
 +
        </li>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">HUNTER COLLINS</p>
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 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/f/fe/UCSF_Hunter.png/800px-UCSF_Hunter.png" alt="Hunter Collins" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed basic circuit.
 +
        </li>
 +
 +
        <li>Cloned parts for parts registry.
 +
        </li>
 +
 +
        <li>Created pages for new parts in parts registry.
 +
        </li>
 +
 +
        <li>Presented project at Reno Synbio Symposium.
 +
        </li>
 +
        </br>
 +
        </br>
 +
        </br>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">ERIK LAMP</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/b/bc/UCSF_Erik.png/800px-UCSF_Erik.png" alt="Erik Lamp" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed positive feedback circuit.
 +
        </li>
 +
 +
        <li>Cloned parts for parts registry.
 +
        </li>
 +
 +
        <li>Created pages for new parts in parts registry.
 +
        </li>
 +
 +
        <li>Medal Requirement Captain.
 +
        </li>
 +
 +
        <li>Presented project at Reno Synbio Symposium.
 +
        </li>
 +
        </br>
 +
        </br>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">SAMANTHA LEE</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/3/3f/UCSF_Samantha.png/800px-UCSF_Samantha.png" alt="Samantha Lee" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed positive feedback circuit.
 +
        </li>
 +
 +
        <li>Graphic Design Co-Captain.
 +
        </li>
 +
 +
        <li>Safety Form and Documentation Captain.
 +
        </li>
 +
 +
        <li>Judging Form Captain.
 +
        </li>
 +
 +
        <li>Designed team t-shirts.
 +
        </li>
 +
        </br>
 +
        </br>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">JOSHUA NOWAK</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/f/f1/UCSF_Josh.png/800px-UCSF_Josh.png" alt="Joshua Nowak" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed signal degradation circuits.
 +
        </li>
 +
 +
        <li>Computer Programming and Wiki Captain.
 +
        </li>
 +
 +
        <li>Constructed mathematical modeling simulations.
 +
        </li>
 +
 +
        <li>Presented project at Reno Synbio Symposium.
 +
        </li>
 +
        </br>
 +
        </br>
 +
        </br>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">STANLEE QUACH</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/3/36/UCSF_Stanlee.png/800px-UCSF_Stanlee.png" alt="Stanlee Quach" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed positive feedback circuit.
 +
        </li>
 +
 +
        <li>Designed team hoodies.
 +
        </li>
 +
 +
        <li>Created wiki framework.
 +
        </li>
 +
 +
        <li>Gathered data on yeast strains.
 +
        </li>
 +
 +
        <li>Presented project at Reno Synbio Symposium.
 +
        </li>
 +
 +
        <li>Designed team banner.
 +
        </li>
 +
 +
        <li>Animated Wiki Flicks video.
 +
        </li>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">JASMINE SIMS</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/2/23/UCSF_Jasmine.png/800px-UCSF_Jasmine.png" alt="Jasmine Sims" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed basic circuit.
 +
        </li>
 +
 +
        <li>Attributions Captain.
 +
        </li>
 +
 +
        <li>Collaborations Captain.
 +
        </li>
 +
 +
        <li>Presented project at Reno Synbio Symposium
 +
        </li>
 +
        </br>
 +
        </br>
 +
        </br>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">JEFFREY SHU</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/5/5e/UCSF_Jeffrey.png/800px-UCSF_Jeffrey.png" alt="Jeffrey Shu" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
 +
        <li>Constructed initial circuit.
 +
        </li>
 +
 +
        <li>Constructed clustering circuit.
 +
        </li>
 +
 +
        <li>Constructed mathematical modeling simulations.
 +
        </li>
 +
 +
        <li>Assisted other team members with lab work.
 +
        </li>
 +
 +
        <li>Presented project at Reno Synbio Symposium.
 +
        </li>
 +
 +
        <li>Designed team poster.
 +
        </li>
 +
 +
        <li>Organized content for wiki.
 +
        </li>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
    <p class="headerTeamSub">NICHOLAS SUEN</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
 +
    <img style="float:right;margin-right:100px;margin-top:-70px" src="https://static.igem.org/mediawiki/2015/thumb/8/8a/UCSF_Nick.png/800px-UCSF_Nick.png" alt="Nicholas Suen" height="267" width="400">
 +
   
 +
      <ul class="content1">
 +
 +
        <li>Constructed basic circuit.
 +
        </li>
 +
 +
        <li>Cloned parts for parts registry.
 +
        </li>
 +
 +
        <li>Created pages for new parts in parts registry.
 +
        </li>
 +
 +
        <li>Created finalized circuit.
 +
        </li>
 +
 +
        <li>Characterized parts.
 +
        </li>
 +
 +
        <li>Flow­-Cytometry Captain.
 +
        </li>
 +
 +
        <li>Presented project at Reno Synbio Symposium.
 +
        </li>
 +
 +
      </ul>
 +
 +
    </p>
 +
 +
    </br>
 +
 +
  </div>
 +
 +
<div class="divider"></div>
 +
 +
  <div class="main-content">
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 +
    <p class="headerTeam">SUPERVISION</p>
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 +
    <div class="headerBreak"></div>
 +
 +
    <p class="headerTeamSub">GENERAL SUPPORT</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
General support was provided by Kara Helmke our team advisor and coordinator. Lab procedures and daily activities were done under her supervision and she helped keep us focused and organized. Kara also provided assistance when necessary.
 +
</br>
 +
Additionally, all of our mentors regularly provided feedback and advice on our progress and presentations at weekly meetings.
 +
    </p>
 +
 +
    <p class="headerTeamSub">MODELING SUPPORT</p>
 +
 +
    <div class="headerBreakSub"></div>
 +
    </br>
 +
 +
    <p class="content1">
 +
Modeling support was provided by Kevin Hartman and Weiyue Ji. They gave weekly lessons on using our modeling software, MATLAB, and assisted us in creating our modeling equations.
 +
    </p>
 +
 +
  </div>
 +
 
 +
<div class="divider"></div>
 +
 +
  <div class="main-content">
 +
 +
    <p class="headerTeam">OTHER ACKNOWLEDGEMENTS</p>
 +
 +
    <div class="headerBreak"></div>
 +
 +
    <p class="content1">
 +
Our project concept about cellular divergence drew heavy inspiration from the UCSF UCB 2014 iGEM Team's project on cellular convergence. We based our initial circuit off of their design and modified it downstream to suit our needs. Our wiki was also inspired by both the UCSF UCB 2014 team and the LMU-Munich 2014 team. We drew inspiration from UCSF UCB's crisp clean design and navigation along with LMU-Munich's use of a large skyline image for their homepage. We would also like to give special thanks to Russell Gordley for allowing us to use his LexADBD transcription factor and LexAOps promoter. Additionally, we are thankful for the Lim Lab's generous support in providing lab space and materials. Lastly, we would like to thank our sponsors for their support and funding that made this research possible.
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    </p>
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Revision as of 01:26, 15 September 2015

COLLABORATIONS

In addition to working on our project, our team also assisted and collaborated with various other iGEM Teams. These interactions allowed us to form stronger connections in the iGEM community and ultimately benefited the projects of all parties involved.



ELEANOR AMIDEI


Eleanor Amidei

  • Constructed initial circuit.
  • Constructed clustering circuit.
  • Constructed terminator sequences.
  • Assisted other team members with lab work.
  • Policy and Practices Co­-Captain.
  • Gathered data on clustering.


ERIKA CAGAMPAN


Erika Cagampan

  • Constructed terminator sequences.
  • Constructed signal degradation circuits.
  • Social Media Correspondent.
  • Captain of Wiki Flicks.
  • Policy and practices Co-­Captain.
  • Constructed mathematical modeling simulations.
  • Constructed and organized team member biographies.


HUNTER COLLINS


Hunter Collins

  • Constructed basic circuit.
  • Cloned parts for parts registry.
  • Created pages for new parts in parts registry.
  • Presented project at Reno Synbio Symposium.




ERIK LAMP


Erik Lamp

  • Constructed positive feedback circuit.
  • Cloned parts for parts registry.
  • Created pages for new parts in parts registry.
  • Medal Requirement Captain.
  • Presented project at Reno Synbio Symposium.



SAMANTHA LEE


Samantha Lee

  • Constructed positive feedback circuit.
  • Graphic Design Co-Captain.
  • Safety Form and Documentation Captain.
  • Judging Form Captain.
  • Designed team t-shirts.



JOSHUA NOWAK


Joshua Nowak

  • Constructed signal degradation circuits.
  • Computer Programming and Wiki Captain.
  • Constructed mathematical modeling simulations.
  • Presented project at Reno Synbio Symposium.




STANLEE QUACH


Stanlee Quach

  • Constructed positive feedback circuit.
  • Designed team hoodies.
  • Created wiki framework.
  • Gathered data on yeast strains.
  • Presented project at Reno Synbio Symposium.
  • Designed team banner.
  • Animated Wiki Flicks video.


JASMINE SIMS


Jasmine Sims

  • Constructed basic circuit.
  • Attributions Captain.
  • Collaborations Captain.
  • Presented project at Reno Synbio Symposium




JEFFREY SHU


Jeffrey Shu

  • Constructed initial circuit.
  • Constructed clustering circuit.
  • Constructed mathematical modeling simulations.
  • Assisted other team members with lab work.
  • Presented project at Reno Synbio Symposium.
  • Designed team poster.
  • Organized content for wiki.


NICHOLAS SUEN


Nicholas Suen

  • Constructed basic circuit.
  • Cloned parts for parts registry.
  • Created pages for new parts in parts registry.
  • Created finalized circuit.
  • Characterized parts.
  • Flow­-Cytometry Captain.
  • Presented project at Reno Synbio Symposium.


SUPERVISION

GENERAL SUPPORT


General support was provided by Kara Helmke our team advisor and coordinator. Lab procedures and daily activities were done under her supervision and she helped keep us focused and organized. Kara also provided assistance when necessary.
Additionally, all of our mentors regularly provided feedback and advice on our progress and presentations at weekly meetings.

MODELING SUPPORT


Modeling support was provided by Kevin Hartman and Weiyue Ji. They gave weekly lessons on using our modeling software, MATLAB, and assisted us in creating our modeling equations.

OTHER ACKNOWLEDGEMENTS

Our project concept about cellular divergence drew heavy inspiration from the UCSF UCB 2014 iGEM Team's project on cellular convergence. We based our initial circuit off of their design and modified it downstream to suit our needs. Our wiki was also inspired by both the UCSF UCB 2014 team and the LMU-Munich 2014 team. We drew inspiration from UCSF UCB's crisp clean design and navigation along with LMU-Munich's use of a large skyline image for their homepage. We would also like to give special thanks to Russell Gordley for allowing us to use his LexADBD transcription factor and LexAOps promoter. Additionally, we are thankful for the Lim Lab's generous support in providing lab space and materials. Lastly, we would like to thank our sponsors for their support and funding that made this research possible.

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