Difference between revisions of "Team:UCSF/Project Sub"

 
(32 intermediate revisions by one other user not shown)
Line 1: Line 1:
{{UCSF/test}}
+
{{UCSF/main}}
  
 
<html>
 
<html>
Line 19: Line 19:
 
         </li>
 
         </li>
  
         <li class = "projectDesign down"><a href="#pageDesign">DESIGN</a>
+
         <li class = "projectModeling down"><a href="#pageModeling">MODELING</a>
        </li>
+
 
+
        <li class = "projectExperiments down"><a href="#pageExperiments">EXPERIMENTS</a>
+
 
         </li>
 
         </li>
  
Line 37: Line 34:
 
   <div class="main-content">
 
   <div class="main-content">
  
     <h1 class="Header">DESCRIPTION</h1>
+
     <p class="headerProject">DESCRIPTION</p>
  
     <p class="content1">女王は自宅で、海外彼らの "優しさの感動のメッセージ」を、彼女は英国の最長君臨君主になるとよく有志に感謝しています。
+
     <div class="headerBreak"></div>
スコティッシュボーダーズでいえば、89歳の君主は、タイトルだった」と私が今まで熱望していないと1を」と述べました。
+
 
彼女の素晴らしい-曾祖母ビクトリア女王の治世を上回る - 午後5時30 BST、彼女は23226日、16時間、約30分間君臨していました。
+
<div class="circuitCenter" style="height:250px">
デビッドキャメロンは、女王が与えていたサービスは、「本当に屈辱的」と述べました。
+
<img src="https://static.igem.org/mediawiki/2015/e/ef/UCSF_Generalized_Circuit_Diagram.png" alt="General Circuit Diagram" width="431" height="250" style="margin:0 0 0 215px;">
 +
</div>
 +
 
 +
    <p class="content1">We are building a synthetic model in <i>S. cerevisiae</i> to understand communication's role in biological decision-making. Our model consists of four main parts: Basic Circuit, Positive Feedback, Signal Degradation, and Clustering. Using the model, we hope to be able to cause a population divergence with an outside stimulus.
 +
    </p>
 +
 
 +
    <p class="content2">To learn more about our synthetic model, click the button below.
 
     </p>
 
     </p>
 
      
 
      
Line 49: Line 52:
 
   </div>
 
   </div>
  
  <div class="navSub navProject">
+
<div class="navSub navProject">
   <a id="pageDesign"></a>
+
   <a id="pageModeling"></a>
  
 
     <ul>
 
     <ul>
Line 57: Line 60:
 
         </li>
 
         </li>
  
         <li class = "projectDesignP"><p>DESIGN</p>
+
         <li class = "projectModelingP"><p>MODELING</p>
        </li>
+
 
+
        <li class = "projectExperiments down"><a href="#pageExperiments">EXPERIMENTS</a>
+
 
         </li>
 
         </li>
  
Line 75: Line 75:
 
   <div class="main-content">
 
   <div class="main-content">
  
     <h1 class="Header">DESIGN</h1>
+
     <p class="headerProject">MODELING</p>
  
     <p class="content1">DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN DESIGN
+
    <div class="headerBreak"></div>
 +
 
 +
     <p class="content1">
 +
Our project this year is centered around the emergence of distinct community phenotypes when individuals in a population are allowed to communicate. Focusing on the community phenotype of bimodal activation, our model aims to mathematically estimate distinct states of multiple cells in the population in different immediate extracellular environments.
 
     </p>
 
     </p>
  
     <div class="readMore"><a href="https://2015.igem.org/Team:UCSF/Attributions">Read More <img class="readMoreArrow" src="https://static.igem.org/mediawiki/2015/6/68/UCSF_Read_More_Arrow.png" alt="Next Arrow" height="35" width="35"></a>
+
    <p class="content2">
 +
For more information on our modeling, click the button below.
 +
    </p>
 +
 
 +
     <div class="readMore"><a href="https://2015.igem.org/Team:UCSF/Modeling">Read More <img class="readMoreArrow" src="https://static.igem.org/mediawiki/2015/6/68/UCSF_Read_More_Arrow.png" alt="Next Arrow" height="35" width="35"></a>
 
     </div>
 
     </div>
  
Line 86: Line 93:
  
 
   <div class="navSub navProject">
 
   <div class="navSub navProject">
   <a id="pageExperiments"></a>
+
   <a id="pageResults"></a>
  
 
     <ul>
 
     <ul>
Line 93: Line 100:
 
         </li>
 
         </li>
  
         <li class = "projectDesign up"><a href="#pageDesign">DESIGN</a>
+
         <li class = "projectModeling up"><a href="#pageModeling">MODELING</a>
 
         </li>
 
         </li>
  
         <li class = "projectExperimentsP"><p>EXPERIMENTS</p>
+
         <li class = "projectResultsP"><p>RESULTS</p>
        </li>
+
 
+
        <li class = "projectResults down"><a href="#pageResults">RESULTS</a>
+
 
         </li>
 
         </li>
  
Line 111: Line 115:
 
   <div class="main-content">
 
   <div class="main-content">
  
     <h1 class="Header">EXPERIMENTS</h1>
+
     <p class="headerProject">RESULTS</p>
  
     <p class="content1">EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS EXPERIMENTS
+
    <div class="headerBreak"></div>
 +
 
 +
     <p class="content1">
 +
Our goal for our circuit is to elicit a divergent community response from two genetically similar cells by varying different communication parameters. To measure distinct community responses in our circuit, we will look at INDIVIDUAL (GFP) response versus COMMUNITY (RFP) response.
 
     </p>
 
     </p>
  
     <div class="readMore"><a href="https://2015.igem.org/Team:UCSF/Attributions">Read More <img class="readMoreArrow" src="https://static.igem.org/mediawiki/2015/6/68/UCSF_Read_More_Arrow.png" alt="Next Arrow" height="35" width="35"></a>
+
    <p class="content2">To learn more about our experiments and results, click the button below.
 +
    </p>
 +
 
 +
     <div class="readMore"><a href="https://2015.igem.org/Team:UCSF/Results">Read More <img class="readMoreArrow" src="https://static.igem.org/mediawiki/2015/6/68/UCSF_Read_More_Arrow.png" alt="Next Arrow" height="35" width="35"></a>
 
     </div>
 
     </div>
  
 
   </div>
 
   </div>
 +
 +
  
 
   <div class="navSub navProject">
 
   <div class="navSub navProject">
   <a id="pageResults"></a>
+
   <a id="pageParts"></a>
  
 
     <ul>
 
     <ul>
Line 129: Line 141:
 
         </li>
 
         </li>
  
         <li class = "projectDesign up"><a href="#pageDesign">DESIGN</a>
+
         <li class = "projectModeling up"><a href="#pageModeling">MODELING</a>
 
         </li>
 
         </li>
  
         <li class = "projectExperiments up"><a href="pageExperiments">EXPERIMENTS</a>
+
         <li class = "projectResults up"><a href="#pageResults">RESULTS</a>
 
         </li>
 
         </li>
  
         <li class = "projectResultsP"><p>RESULTS</p>
+
         <li class = "projectPartsP"><p>PARTS</p>
        </li>
+
 
+
        <li class = "projectParts down"><a href="#pageParts">PARTS</a>
+
 
         </li>
 
         </li>
  
Line 147: Line 156:
 
   <div class="main-content">
 
   <div class="main-content">
  
     <h1 class="Header">RESULTS</h1>
+
     <p class="headerProject">PARTS</p>
  
     <p class="content1">RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS RESULTS
+
    <div class="headerBreak"></div>
 +
 
 +
     <p class="content1">
 +
Our project consisted of different promoters, fluorescent proteins, and many other parts that contributed to our overall circuit. We are making many of these parts available to the public by submitting them to the parts registry. Our team has worked painstakingly throughout the final weeks of the summer to adapt our parts to be BioBrick compatible. By ordering our parts you can recreate 2015 UCSF iGEM project by constructing our circuit.
 
     </p>
 
     </p>
  
     <div class="readMore"><a href="https://2015.igem.org/Team:UCSF/Results">Read More <img class="readMoreArrow" src="https://static.igem.org/mediawiki/2015/6/68/UCSF_Read_More_Arrow.png" alt="Next Arrow" height="35" width="35"></a>
+
     <div class="readMore"><a href="https://2015.igem.org/Team:UCSF/Parts">Read More <img class="readMoreArrow" src="https://static.igem.org/mediawiki/2015/6/68/UCSF_Read_More_Arrow.png" alt="Next Arrow" height="35" width="35"></a>
 
     </div>
 
     </div>
  
   </div>
+
   </div><!--```````````````````````````````````````````END OF MAIN CONTENT```````````````````````````````````````````````````-->
  
 
   <div class="push"></div>
 
   <div class="push"></div>
  
   </div><!--````````````````````````````````````````````END OF MAIN CONTENT```````````````````````````````````````````````````-->
+
   <div><!--```````````````````````````````````````````````START OF FOOTER HTML```````````````````````````````````````````````-->
 +
        <footer>
 +
          <div id="backToTop"><a style="text-decoration:none" id="Top">
 +
            <img id="backToTopArrow" src="https://static.igem.org/mediawiki/2015/6/68/UCSF_Read_More_Arrow.png" alt="Back To Top Arrow" width="90" height="90">
 +
            </br>
 +
            <p>BACK TO TOP</p></a>
 +
          </div>
 +
          <div id="siteMap">
 +
            <ul>
 +
              <h3 class="hoverHome"><a href="https://2015.igem.org/Team:UCSF">HOME</a></h3>
 +
            </ul>
 +
            <ul id="hoverProjectSections">
 +
              <h3 class="hoverProject"><a href="https://2015.igem.org/Team:UCSF/Project_Sub">PROJECT</a></h3>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Description">DESCRIPTION</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Modeling">MODELING</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Results">RESULTS</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Parts">PARTS</a></li>
 +
            </ul>
 +
            <ul id="hoverJudgingSections">
 +
              <h3 class="hoverJudging"><a href="https://2015.igem.org/Team:UCSF/Judging_Sub">JUDGING</a></h3>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Medal_Requirements">MEDAL</br>REQUIREMENTS</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Safety">SAFETY</a></li>
 +
            </ul>
 +
            <ul id="hoverHumanPracticesSections">
 +
              <h3 class="hoverHumanPractices"><a href="https://2015.igem.org/Team:UCSF/Human_Practices_Sub">HUMAN PRACTICES</a></h3>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Practices">HUMAN PRACTICES</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Wiki_Flicks">WIKI FLICKS</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Collaborations">COLLABORATIONS</a></li>
 +
            </ul>
 +
            <ul id="hoverNotebooksSections">
 +
              <h3 class="hoverNotebooks"><a href="https://2015.igem.org/Team:UCSF/Notebook_Sub">NOTEBOOKS</a></h3>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Notebook">NOTEBOOKS</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Protocols">PROTOCOLS</a></li>
 +
            </ul>
 +
            <ul id="hoverTeamSections">
 +
              <h3 class="hoverTeam"><a href="https://2015.igem.org/Team:UCSF/Team_Sub">TEAM</a></h3>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Team">TEAM</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Attributions">ATTRIBUTIONS</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Team#pageTeamAdvisors">ADVISORS</a></li>
 +
              <li><a href="https://2015.igem.org/Team:UCSF/Team_Sub#pageSponsors">SPONSORS</a></li>
 +
            </ul>
 +
          </div>
 +
          <div id="socialMedia">
 +
            <ul>
 +
              <li><a href="https://twitter.com/iGEM_UCSF"><img src="https://static.igem.org/mediawiki/2015/3/33/UCSF_Twitter_Logo.png" alt="Twitter Logo" width="30" height="30"> @IGEM_UCSF</a></li>
 +
              <li><a href="https://www.facebook.com/pages/UCSF-IGEM/290769630936213"><img src="https://static.igem.org/mediawiki/2015/a/a1/UCSF_Facebook_Logo.png" alt="Twitter Logo" width="30" height="30"> UCSF IGEM</a></li>
 +
              <li><a href="mailto:syssynbio@ucsf.edu"><img src="https://static.igem.org/mediawiki/2015/8/82/Email_Logo.png" alt="Email Logo" width="30" height="30"> syssynbio@ucsf.edu</a></li>
 +
            </ul>
 +
          </div>
 +
        </footer>
 +
  </div><!--````````````````````````````````````````END OF FOOTER HTML```````````````````````````````````````````````````````-->
  
</div><!--`````````````````````````````````````````````END OF MAIN CONTAINER``````````````````````````````````````````````````-->
+
</div><!--````````````````````````````````````````````END OF MAIN CONTAINER``````````````````````````````````````````````````-->
  
 
</body>
 
</body>

Latest revision as of 02:22, 19 September 2015

DESCRIPTION

General Circuit Diagram

We are building a synthetic model in S. cerevisiae to understand communication's role in biological decision-making. Our model consists of four main parts: Basic Circuit, Positive Feedback, Signal Degradation, and Clustering. Using the model, we hope to be able to cause a population divergence with an outside stimulus.

To learn more about our synthetic model, click the button below.

MODELING

Our project this year is centered around the emergence of distinct community phenotypes when individuals in a population are allowed to communicate. Focusing on the community phenotype of bimodal activation, our model aims to mathematically estimate distinct states of multiple cells in the population in different immediate extracellular environments.

For more information on our modeling, click the button below.

RESULTS

Our goal for our circuit is to elicit a divergent community response from two genetically similar cells by varying different communication parameters. To measure distinct community responses in our circuit, we will look at INDIVIDUAL (GFP) response versus COMMUNITY (RFP) response.

To learn more about our experiments and results, click the button below.

PARTS

Our project consisted of different promoters, fluorescent proteins, and many other parts that contributed to our overall circuit. We are making many of these parts available to the public by submitting them to the parts registry. Our team has worked painstakingly throughout the final weeks of the summer to adapt our parts to be BioBrick compatible. By ordering our parts you can recreate 2015 UCSF iGEM project by constructing our circuit.