Difference between revisions of "Team:HKUST-Rice"
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<p>Potassium (K), phosphorus (P) and nitrogen (N) are three plant macronutrients, and deficiencies in any of these can lead to plant diseases. By creating a biological sensor that can quickly provide soil status to plant owners, we can prevent plant diseases caused by the lack of nutrients.</p> | <p>Potassium (K), phosphorus (P) and nitrogen (N) are three plant macronutrients, and deficiencies in any of these can lead to plant diseases. By creating a biological sensor that can quickly provide soil status to plant owners, we can prevent plant diseases caused by the lack of nutrients.</p> | ||
| − | <p>In previous iGEM competitions, nitrate and phosphate responsive promoters have been explored extensively. However, a potassium responsive promoter is still lacking. In view of this, our team constructed a biological sensor in <i>E. coli</i>, which can detect KPN levels in the surrounding environment and give responses in the form of colors. In addition, we characterized the effects of a | + | <p>In previous iGEM competitions, nitrate and phosphate responsive promoters have been explored extensively. However, a potassium responsive promoter is still lacking. In view of this, our team constructed a biological sensor in <i>E. coli</i>, which can detect KPN levels in the surrounding environment and give responses in the form of colors. In addition, we characterized the effects of a parallel sensing system, in contrast to a single output system, in order to anticipate the expression of multiple outputs in a single system.</p> |
<p style=" text-align: right"><a class=" learn" href="https://2015.igem.org/Team:HKUST-Rice/Description"> Learn more ... </a></p> | <p style=" text-align: right"><a class=" learn" href="https://2015.igem.org/Team:HKUST-Rice/Description"> Learn more ... </a></p> | ||
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<p>We are HKUST-Rice iGEM team. Our team is the first cross continental team in iGEM, comprising of <a href ="https://2015.igem.org/Team:HKUST-Rice/Team" >32 student members</a>- 18 from the Hong Kong University of Science and Technology and 14 from Rice University. The benefit from forming a large joint team is that we have members coming from different disciplines which contribute different perspectives to the project. With the combined force from our members, we show the result of our work over the summer.</p> | <p>We are HKUST-Rice iGEM team. Our team is the first cross continental team in iGEM, comprising of <a href ="https://2015.igem.org/Team:HKUST-Rice/Team" >32 student members</a>- 18 from the Hong Kong University of Science and Technology and 14 from Rice University. The benefit from forming a large joint team is that we have members coming from different disciplines which contribute different perspectives to the project. With the combined force from our members, we show the result of our work over the summer.</p> | ||
<p>Taking the native metabolic pathway found in <i>E. coli</i>, we have designed a <a href ="https://2015.igem.org/Team:HKUST-Rice/Potassium_Sensor" >potassium ion (K<sup>+</sup>) regulated construct</a> and a <a href ="https://2015.igem.org/Team:HKUST-Rice/Nitrate_Sensor_PdcuS" >nitrate (NO<sub>3</sub><sup>-</sup>) regulated construct</a> that could potentially report the K<sup>+</sup> and NO<sub>3</sub><sup>-</sup> level in soil. Since previous iGEM teams have also worked on <a href ="https://2015.igem.org/Team:HKUST-Rice/Nitrate_Sensor_PyeaR" >nitrate regulated promoters</a> and<a href ="https://2015.igem.org/Team:HKUST-Rice/Phosphate_Sensor" > phosphate regulated promoters</a>, our team utilized these promoters and further characterized them in order to provide more information on these promoters.</p> | <p>Taking the native metabolic pathway found in <i>E. coli</i>, we have designed a <a href ="https://2015.igem.org/Team:HKUST-Rice/Potassium_Sensor" >potassium ion (K<sup>+</sup>) regulated construct</a> and a <a href ="https://2015.igem.org/Team:HKUST-Rice/Nitrate_Sensor_PdcuS" >nitrate (NO<sub>3</sub><sup>-</sup>) regulated construct</a> that could potentially report the K<sup>+</sup> and NO<sub>3</sub><sup>-</sup> level in soil. Since previous iGEM teams have also worked on <a href ="https://2015.igem.org/Team:HKUST-Rice/Nitrate_Sensor_PyeaR" >nitrate regulated promoters</a> and<a href ="https://2015.igem.org/Team:HKUST-Rice/Phosphate_Sensor" > phosphate regulated promoters</a>, our team utilized these promoters and further characterized them in order to provide more information on these promoters.</p> | ||
| − | <p>In addition, we characterized the effects of a <a href ="https://2015.igem.org/Team:HKUST-Rice/Expression" > | + | <p>In addition, we characterized the effects of a <a href ="https://2015.igem.org/Team:HKUST-Rice/Expression" >paralle sensing system</a>, in contrast to a single output system, in order to predict the expression of multiple outputs in a single system.</p> |
<p>When it comes to the real application method of our biosensors, our team considered two factors- biological <a href ="https://2015.igem.org/Team:HKUST-Rice/Safety" >safety</a> and feasibility. Biological safety is our priority, especially since the practical application of our project is related to the agricultural business. In our plan of applying the biosensor, we chose to deliver the biosensor in a <a href ="" >cell-free system</a>, which has no capability to sustain itself in the wild. However, after factoring in the feasibility, we think that delivering our biosensor in <a href ="" >common soil bacteria</a> will be more practical. Hence we perform proof-of-concept experiments to demonstrate our idea. </p> | <p>When it comes to the real application method of our biosensors, our team considered two factors- biological <a href ="https://2015.igem.org/Team:HKUST-Rice/Safety" >safety</a> and feasibility. Biological safety is our priority, especially since the practical application of our project is related to the agricultural business. In our plan of applying the biosensor, we chose to deliver the biosensor in a <a href ="" >cell-free system</a>, which has no capability to sustain itself in the wild. However, after factoring in the feasibility, we think that delivering our biosensor in <a href ="" >common soil bacteria</a> will be more practical. Hence we perform proof-of-concept experiments to demonstrate our idea. </p> | ||
<p>Besides lab work, we also engaged the community- introducing synthetic biology to the younger community by <a href ="https://2015.igem.org/Team:HKUST-Rice/Practices_Debate" >debating</a> and interacting with and <a href ="https://2015.igem.org/Team:HKUST-Rice/Practices_ExploratoryResearch" >gathering the community's perception</a> regarding biosensors and genetic engineering technology. Through engagement with the community, we gained valuable feedback and comments which we then used to improve our design. </p> | <p>Besides lab work, we also engaged the community- introducing synthetic biology to the younger community by <a href ="https://2015.igem.org/Team:HKUST-Rice/Practices_Debate" >debating</a> and interacting with and <a href ="https://2015.igem.org/Team:HKUST-Rice/Practices_ExploratoryResearch" >gathering the community's perception</a> regarding biosensors and genetic engineering technology. Through engagement with the community, we gained valuable feedback and comments which we then used to improve our design. </p> | ||
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Revision as of 00:40, 14 September 2015
Project Description
Potassium (K), phosphorus (P) and nitrogen (N) are three plant macronutrients, and deficiencies in any of these can lead to plant diseases. By creating a biological sensor that can quickly provide soil status to plant owners, we can prevent plant diseases caused by the lack of nutrients.
In previous iGEM competitions, nitrate and phosphate responsive promoters have been explored extensively. However, a potassium responsive promoter is still lacking. In view of this, our team constructed a biological sensor in E. coli, which can detect KPN levels in the surrounding environment and give responses in the form of colors. In addition, we characterized the effects of a parallel sensing system, in contrast to a single output system, in order to anticipate the expression of multiple outputs in a single system.
The Journey of HKUST-Rice iGEM team
We are HKUST-Rice iGEM team. Our team is the first cross continental team in iGEM, comprising of 32 student members- 18 from the Hong Kong University of Science and Technology and 14 from Rice University. The benefit from forming a large joint team is that we have members coming from different disciplines which contribute different perspectives to the project. With the combined force from our members, we show the result of our work over the summer.
Taking the native metabolic pathway found in E. coli, we have designed a potassium ion (K+) regulated construct and a nitrate (NO3-) regulated construct that could potentially report the K+ and NO3- level in soil. Since previous iGEM teams have also worked on nitrate regulated promoters and phosphate regulated promoters, our team utilized these promoters and further characterized them in order to provide more information on these promoters.
In addition, we characterized the effects of a paralle sensing system, in contrast to a single output system, in order to predict the expression of multiple outputs in a single system.
When it comes to the real application method of our biosensors, our team considered two factors- biological safety and feasibility. Biological safety is our priority, especially since the practical application of our project is related to the agricultural business. In our plan of applying the biosensor, we chose to deliver the biosensor in a cell-free system, which has no capability to sustain itself in the wild. However, after factoring in the feasibility, we think that delivering our biosensor in common soil bacteria will be more practical. Hence we perform proof-of-concept experiments to demonstrate our idea.
Besides lab work, we also engaged the community- introducing synthetic biology to the younger community by debating and interacting with and gathering the community's perception regarding biosensors and genetic engineering technology. Through engagement with the community, we gained valuable feedback and comments which we then used to improve our design.
